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Fish in the Lower Coos Watershed

Jenni Schmitt, Erik Larsen, Colleen Burch Johnson – South Slough NERR

Salmonids: The status of Chinook salmon and cutthroat trout populations is generally good; the status of Coho salmon and
steelhead trout populations is variable, depending on stream
system.


Lamprey: More data are needed to understand the status and distribution of the two lamprey species native to the Coos water-
shed, which appear to be declining in abundance in Oregon.


Sturgeon: Little is known about the status of the two sturgeon
species found in the Coos system.


Other Fish: The Coos estuary supports more than 70 fish species
but more information is needed to understand their populations
and life histories.

Subsystems:    CR- Coos River   CS- Catching Slough    HI- Haynes Inlet   IS- Isthmus Slough   LB- Lower Bay    NS- North Slough   PS- Pony Slough   SS- South Slough   UB- Upper Bay

Subsystems: CR- Coos River CS- Catching Slough HI- Haynes Inlet IS- Isthmus Slough LB- Lower Bay NS- North Slough PS- Pony Slough SS- South Slough UB- Upper Bay

Microsoft Word - FINAL Fish Chapter Summary 20140224.docx
Fish in the Lower Coos Watershed

This section includes the following data summaries: Salmonids, Lamprey, Sturgeon, and Other
Fishes
— which describe the status and trends (where the data allow) of fish in the Coos estuary and major freshwater tributaries in the lower Coos watershed.

Salmonids: Data detailing the status of salmonid species in the Coos watershed were provided by the Oregon Plan for Salmon and Watersheds (Oregon Plan), which includes four Oregon Department of Fish and Wildlife (ODFW) fish monitoring projects: 1) Western Oregon Rearing Project (juveniles); 2) Aquatic Inventories Project (habitat); 3) Oregon Adult Salmonid Inventory and Sampling project (OASIS)(adults); and 4) Salmonid Life-Cycle Monitoring Project (survival)(ODFW 2013b). Oregon Plan data were supplemented by ODFW spawning survey data and the Oregon Native Fish Status Report (ODFW 2002, 2003, 2004, 2005c, 2005d, 2006, 2007, 2008, 2009, 2010, 2011, 2012, & 2013d).

The data presented in this chapter cover fish abundance and distribution at both the watershed and subsystem scales. At the watershed scale, the OASIS project provided abundance and distribution data for both adult Coho salmon and adult winter steelhead trout (ODFW 2013e; ODFW 2013f; Suring and Lewis 2008; Suring et al. 2008;Brown and Lewis 2009 & 2010; Brown et al. 2011, & 2012; Jacobsen et al. 2013). OASIS data were collected at 24 Oregon coast sites for Coho salmon and 13 sites for steelhead. The most recent OASIS data are from 2012, but the project also provides historic data for both Coho salmon and steelhead trout, dating back to 1990 and 2003 respectively. Adult Chinook abundance data were provided by ODFW spawning survey summaries, with the most recent data coming from 2013 (ODFW 2002, 2003, 2004, 2005d, 2006, 2007, 2008, 2009, 2010, 2011, 2012, & 2013d). An unpublished manuscript of ODFW’s 2014 Coastal Multi-Species Conservation Management Plan was also referenced (ODFW 2014). Historic adult Chinook data (1974-2002) came from the 2005 Oregon Native Fish Status Report (ODFW 2005c).

At the subsystem-level, the most robust data are available from the Coos River and Haynes Inlet subsystems. In these basins, Coos Watershed Association (CoosWA) spawning surveys provided recent data (up to 2011) for Coho salmon (CoosWA 2011). Data for the South Slough subsystem are available from the Life Cycle Monitoring Program (Suring et al. 2012). These data were collected most recently in 2012.

Lamprey: The Lamprey data summary is based largely on incidental catch records from ODFW’s Coho life-cycle monitoring project which reports, but does not analyze, lamprey counts (Suring et al. 2012). Likewise, unpublished raw lamprey data from CoosWA’s Coho life-cycle monitoring project were used in the summary (CoosWA 2012). Counts of lamprey stream bed gravel nests, called “redds”, were also obtained from several reports (e.g., Kostow 2002). However, the redds data are a less accurate estimate of lamprey abundance because they are difficult to distinguish from steelhead redds (Kavanagh et al. 2005, Gunckel et al. 2006).

Sturgeon: Information about the status of sturgeon in the Coos system was primarily provided by ODFW’s Coos River Bain Fish Management Plan (Wagoner et al. 1990). Additional information is available in reports by Monaco and Emmett 1990; ODFW 2005a; ODFW 2005b; ORBIC 2013; ODFW 2013c and in unpublished data (ODFW 2013a).

Other Fish: Most of the information for the “Other Fish” data summary is from agency reports (e.g., Monaco and Emmett 1990), and was supplemented by theses (e.g. Kruse 1984) and peer-reviewed articles (e.g., Miller and Shanks 2004). While many of these data sources provided historic information, recent unpublished species distribution data were obtained from ODFW (ODFW 2013a) and the Oregon Institute of Marine Biology (OIMB 2013).

Data Gaps and Limitations

Salmonids: There are several imitations to the data describing the status of salmonids. For example, the location of annual spawning surveys conducted by ODFW and CoosWA varies from year to year, because these organizations have limited resources which preclude surveying every stream reach every year. These changes in survey location create gaps in the yearly fish data for some sites.

The use of multiple metrics to estimate salmonid abundance is another limitation. Among the estimation methods are: mark-recapture surveys, area-under-the-curve (AUC) modeling, redd counts, and density based on fish observed per mile of river at peak count. Time series comparisons are possible when the data are sufficiently robust and survey/modeling methods are consistent between years. Comparisons of data collected by different organizations are possible if surveying methods have been standardized. In addition, comparisons based on different abundance metrics have been made with caution, to avoid misleading or inaccurate interpretations. Some metrics can be converted to facilitate comparison. For example, peak count data (number of fish observed) can be converted to density data (fish per mile) by dividing the count at a site by the length of the associated survey section. When conversion is not possible, separate presentations of the data were warranted.

Aggregation of salmonid data also prohibits certain analyses. For example, the Coos River was grouped with the Tenmile, Coquille, Floras, and Sixes Rivers for a regional abundance estimate in ODFW’s 2013 OASIS Winter Steelhead Assessment Report (Jacobsen et al. 2013). Although regional aggregations are useful for statewide comparisons they may overestimate salmonid abundance in the Coos watershed alone.

Lamprey: There are no historic or current abundance estimates to determine status or trends for either lamprey species in the state of Oregon. Distribution information is also lacking for both lamprey species due to the difficulty in identifying ammocoetes (juveniles) by species (ODFW 2005c). Moreover, there is little life history information for either species in the Coos estuary. Detailed life history information for western brook lamprey is especially limited (ODFW 2005c).

Sturgeon: Information about abundance, distribution, and life histories of both white and green sturgeon in the Coos watershed is sparse. Neither past nor present abundance data for coastal white sturgeon exist. (ODFW 2005b). Similarly, very little is known about the status of green sturgeon populations, and the available abundance data are inconclusive (ODFW 2005a). More research is needed to alleviate these gaps (Wagoner et al. 1990).

Other Fish: Large data gaps exist for evaluating status and trends of “Other Fish” populations. The most complete assessment of life history data comes from a report by Monaco and Emmett (1990) describing annual distribution and abundance changes by age classes for 36 fish species in 32 West Coast estuaries. The distribution of each species in a particular estuary is based on salinity zones. However, a major limitation of this report is that the quality and quantity of data vary by species with some data derived from considerable field sampling and some based on best professional judgment. This report is also over 20 years old.

Another report from that time period is the Coos River Basin Fish Management Plan by Wagoner et al. (1990). Although this report focused on the Coos system, it primarily highlighted the lack of sampling data for non-salmonid populations. The objectives of the report were to prioritize the issues affecting the Coos system and to assess funding for fish research and monitoring. For example, one of the highest priorities was collecting baseline information on endemic Millicoma dace (Rhinichthys cataractae ssp.), but research and monitoring funds were lacking.

Our summary of Other Fish was mostly developed from raw data in two research projects– one by the Oregon Institute of Marine Biology (OIMB 2013), and a long term monitoring project by the Oregon Department of Fish and Wildlife (ODFW 2013a). The OIMB dataset was limited in scope (i.e., data only from summer 2013) but included accurate fish identifications. Although the ODFW dataset is from an on-going project and includes extensive data dating back to 1965, the project goals and sampling methods have shifted over time, thereby limiting its utility for quantifying fish populations. Some of the inconsistencies include: relocated sampling stations, varying confidence in fish identification between surveyors, estimates in population numbers, and differing seining dates between years.

References
Brown, E. and M. Lewis. 2009. Assessment of Oregon Coastal Adult Winter Steelhead – Redd Surveys 2009. [Monitoring Program Report Number OPSW-ODFW-2009-09]. Oregon Department of Fish and Wildlife. Salem, OR.

Brown, E. and M. Lewis. 2010. Assessment of Oregon Coastal Adult Winter Steelhead – Redd Surveys 2010. [Monitoring Program Report Number OPSW-ODFW-2010-09.] Oregon Department of Fish and Wildlife. Salem, OR.

Brown, E., J. Nott, and M. Lewis. 2011. Assessment of Oregon Coastal Adult Winter Steelhead – Redd Surveys 2011. [Monitoring Program Report Number OPSW-ODFW-2011-09]. Oregon Department of Fish and Wildlife. Salem, OR.

Brown, E., M. Weeber, M. Lewis, E. Hughes, R. Jacobsen, and J. Nott. 2012. Assessment of Oregon Coastal Adult Winter Steelhead – Redd Surveys 2012. [Monitoring Program Report Number OPSWODFW- 2012-09]. Oregon Department of Fish and Wildlife. Salem, OR.

Coos Watershed Association (CoosWA). 2011. Spawning Survey Form Data. [Unpublished data].

Coos Watershed Association (CoosWA). 2012. Coho life-cycle monitoring program. [Unpublished raw data].

Gunckel, S. L., K. K. Jones, and S. E. Jacobs. 2006. Spawning distribution and habitat use of adult Pacific and western brook lamprey in Smith River, Oregon. Oregon Department of Fish and Wildlife. Corvallis, OR.

Jacobsen R., J. Nott, E. Brown, M. Weeber, M. Lewis, and E. Hughes. 2013. Assessment of Western Oregon Adult Winter Steelhead – Redd Surveys 2013. [Monitoring Program Report Number OPSW-ODFW-2013-09.] Oregon Department of Fish and Wildlife. Salem, OR.

Kavanagh, P., K. Jones, C. Stein, and P. Jacobsen. 2005. Fish Habitat Assessment in the Oregon Department of Forestry Elliott Study Area. Oregon Department of Fish and Wildlife. Corvallis, OR.

Kostow, K. 2002. Oregon lampreys natural history, status, and problem analysis. Oregon Department of Fish and Wildlife. Salem OR.

Kruse, G. H. 1984. A simulation model of English sole (Parophrys vetulus) recruitment mechanisms. [PhD Thesis]. Oregon State University.

Miller, J. A. and A. L. Shanks. 2004. Ocean-estuary coupling in the Oregon upwelling region: abundance and transport of juvenile fish and of crab megalopae. Marine Ecology Progress Series 271: 267-279.

Monaco, M. E. and R. L. Emmett. 1990. Distribution and abundance of fishes and invertebrates in West Coast estuaries. Volumes 1 and 2. United States Department of Commerce, National Oceanic and Atmospheric Administration, National Ocean Service. Rockville, MD.

Oregon Biodiversity Information Center (ORBIC). 2013. Rare, Threatened and Endangered Species of Oregon. Institute for Natural Resources, Portland State University. Portland, OR.

Oregon Department of Fish and Wildlife (ODFW). 2002. Summary of Standard Chinook Spawners Surveys: 2002 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2003. Standard Chinook Coastal Spawning Fish Survey Summary: 2003 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2004. Standard Chinook Coastal Spawning Fish Survey Summary: 2004 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2005a. Oregon Native Fish Status Report: Southern and Northern Green Sturgeon. Accessed 22 January 2014. Available online http://www.dfw.state.or.us/fish/onfsr/docs/final/11-other/methods-green-sturgeon.pdf

Oregon Department of Fish and Wildlife (ODFW). 2005b. Oregon Native Fish Status Report: Oregon White Sturgeon. Accessed 22 January 2014. Available online http://www.dfw.state.or.us/fish/onfsr/docs/final/11-other/methods-oregon-white-sturg.pdf

Oregon Department of Fish and Wildlife (ODFW). 2005c. Oregon Native Fish Status Report – Volume II. Available online http://www.dfw.state.or.us/fish/onfsr/report.asp

Oregon Department of Fish and Wildlife (ODFW). 2005d. Standard Chinook Coastal Spawning Fish Survey Summary: 2005 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2006. Standard Chinook Coastal Spawning Fish Survey Summary: 2006 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2007. Standard Chinook Coastal Spawning Fish Survey Summary: 2007 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2008. Standard Chinook Coastal Spawning Fish Survey Summary: 2008 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2009. Standard Chinook Coastal Spawning Fish Survey Summary: 2009 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2010. Standard Chinook Coastal Spawning Fish Survey Summary: 2010 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2011. Standard Chinook Coastal Spawning Fish Survey Summary: 2011 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2012. Standard Chinook Coastal Spawning Fish Survey Summary: 2012 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife (ODFW). 2013a. Coos fish monitoring seine program. [Unpublished raw data].

Oregon Department of Fish and Wildlife (ODFW). 2013b. Salmon Spawning Survey Procedures Manual. Accessed 23 January 2014. Available online http://oregonstate.edu/dept/ODFW/spawn/pdf%20files/reports/2013_CohoSSManualFinal.pdf

Oregon Department of Fish and Wildlife. (ODFW) 2013c. Sport Catch Statistics: Salmon, Steelhead, & Sturgeon. Accessed 22 January 2014. Available online http://www.dfw.state.or.us/resources/fishing/sportcatch.asp

Oregon Department of Fish and Wildlife (ODFW). 2013d. Standard Chinook Coastal Spawning Fish Survey Summary: 2013 Spawning Season. Estuarine and Coastal Sciences Laboratory of South Slough NERR. Accessed 24 January 2014.

Oregon Department of Fish and Wildlife
(ODFW). 2013e. Oregon Coast Coho ESU Adult Spawning Abundance by Strata and Population (1990 – 2003). Accessed 20 December 2013. Available online http://oregonstate.edu/dept/ODFW/spawn/cohoabund.htm

Oregon Department of Fish and Wildlife (ODFW). 2013f. Oregon Coast Coho ESU Adult Spawning Abundance by Stata and Population (2004 – 2012). Accessed 20 December 2013. Available online http://oregonstate.edu/dept/ODFW/spawn/cohoabund.htm

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Suring E., E. Brown and M. Lewis. 2008. Assessment of Oregon Coastal Adult Winter Steelhead – Redd Surveys 2008. [Monitoring Program Report Number OPSW-ODFW-2008-09]. Oregon Department of Fish and Wildlife. Salem, OR.

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Suring, E., R. J. Constable, C. M. Lorion, B. A. Miller, and D. J. Wiley. 2012. Salmonid Life Cycle Monitoring in Western Oregon streams, 2009-2011. [Monitoring Program Report Number OPSW-ODFW-2012-2]. Oregon Department of Fish and Wildlife. Salem, OR.

Wagoner, L. J., K. K. Jones, R. E. Bender, J. A. Butler, D. E. Demory, T. F. Gaumer, J. A. Hurtado, W. G. Mullarky, P. E. Reimers, N. T. Richmond, and T. J. Rumreich. 1990. Coos River Basin Fish Management Plan. Oregon Department of Fish and Wildlife. Salem, OR.